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Is there any gene expression data available for the 1000 Genomes Project samples?

Answer:

The most important available existing expression datasets involving 1000 Genomes individuals are probably the following:

RNAseq (mRNA & miRNA) on 465 individuals (CEU, TSI, GBR, FIN, YRI)

Pre-publication RNA-sequencing data from the Geuvadis project is available through http://www.geuvadis.org

http://www.ebi.ac.uk/arrayexpress/experiments/E-GEUV-1/samples.html
http://www.ebi.ac.uk/arrayexpress/experiments/E-GEUV-2/samples.html

RNAseq on 60 CEU individual [1]

http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-197

Expression arrays on about 800 HapMap 3 individuals with a lot of overlap with 1000g data [1,2]

http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-198
http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-264

RNAseq for 69 YRI individuals [3]

http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-19480

References

  1. Reference:Montgomery SB, Sammeth M, Gutierrez-Arcelus M, Lach RP, Ingle C, Nisbett J, Guigo R, Dermitzakis ET. Transcriptome genetics using second generation sequencing in a Caucasian population. Nature. 2010 Apr 1;464(7289):773-7. Epub 2010 Mar 10.
  2. Reference: Stranger,B.E S.B. Montgomery, A.S. Dimas, L. Parts, O. Stegle, C.E. Ingle, M. Sekowska, G. Davey Smith, D. Evans, M. Gutierrez-Arcelus, A. Price, T. Raj J. Nisbett, A.C. Nica, C. Beazley, R. Durbin, P. Deloukas, E.T. Dermitzakis. Patterns of cis regulatory variation in diverse human populations. PLoS Genetics in press
  3. Reference: Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras JB, Stephens M, Gilad Y, Pritchard JK. Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature. 2010 Apr 1;464(7289):768-72. Epub 2010 Mar 10.

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